Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs76157869 chr7:20693807 T/G 1.22E-6 175 15.55 15.77 3.67 KM Plot
PAAD rs76163552 chr6:170040075 C/T 2.53E-11 178 15.57 15.43 3.55 KM Plot
PAAD rs76185979 chr2:70495188 G/A 0 178 15.37 17.4 1.03 KM Plot
PAAD rs76209308 chr11:68498634 T/G 1.31E-9 176 15.55 14.37 2.2 KM Plot
PAAD rs76236525 chr8:72550326 G/T 4.49E-8 174 15.77 12.18 3.17 KM Plot
PAAD rs7628591 chr3:170084504 T/C 0.00015 177 7.67 14.9 15.97 KM Plot
PAAD rs76293388 chr11:68490750 T/C 8.79E-10 178 15.57 14.2 2.2 KM Plot
PAAD rs76322825 chr2:70525490 A/C 0 178 15.37 17.4 1.03 KM Plot
PAAD rs76328068 chr4:187345308 C/T 2.61E-5 176 15.62 8.23 NA KM Plot
PAAD rs76331179 chr5:172100993 A/G 8.41E-5 175 15.4 15.57 3.9 KM Plot
PAAD rs76409926 chr2:70490865 T/C 0 178 15.33 18.43 1.03 KM Plot
PAAD rs76423056 chr2:70494181 G/C 0 178 15.37 17.4 1.03 KM Plot
PAAD rs76449929 chr11:68481250 A/G 8.79E-10 178 15.57 14.2 2.2 KM Plot
PAAD rs76568631 chr7:20667427 A/G 1.79E-6 177 15.53 15.67 3.67 KM Plot
PAAD rs76569448 chr1:227406767 A/G 3.22E-5 178 15.55 15.43 3.9 KM Plot